Item logo image for PDB Docking Auto Prep

PDB Docking Auto Prep

Item media 1 (screenshot) for PDB Docking Auto Prep

Overview

Automates PDB extraction and Grid Box generation (config.txt) for AutoDock Vina directly in the browser.

AutoGrid PDB is a productivity tool that automates the preparation of the "Grid Box" required for simulations in AutoDock Vina. It calculates the exact mathematical center of inhibitors directly from the RCSB PDB structure page, eliminating manual spatial coordinate extraction.

Details

  • Version
    2.0
  • Updated
    June 3, 2026
  • Size
    19.65KiB
  • Languages
    English
  • Developer
    Email
    shiraishi@ipb.pt
  • Non-trader
    This developer has not identified itself as a trader. For consumers in the European Union, please note that consumer rights do not apply to contracts between you and this developer.

Privacy

Manage extensions and learn how they're being used in your organization
The developer has disclosed that it will not collect or use your data. To learn more, see the developer’s privacy policy.

This developer declares that your data is

  • Not being sold to third parties, outside of the approved use cases
  • Not being used or transferred for purposes that are unrelated to the item's core functionality
  • Not being used or transferred to determine creditworthiness or for lending purposes

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