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GeneSetCart

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Overview

This is an extension to add gene sets that are found in Rummagene and RummaGEO to GeneSetCart

GeneSetCart is an interactive web-based application that enables users to fetch gene sets from various sources, augment these sets with gene-gene co-expression or protein-protein interactions, perform set operations such as union, consensus, and intersection, and visualize and analyze these gene sets in a single session. GeneSetCart supports the uploading of single or multiple gene sets. Users of GeneSetCart can obtain gene sets by searching PubMed for genes co-mentioned with any term in publications. Visualizations of gene sets from the various sources can be generated in the form of publication-ready Venn diagrams, heatmaps, UMAP, SuperVenn diagrams, and UpSet plots that summarize the overlap and similarity between sets. Users can also perform functional enrichment analysis of their assembled gene sets through external links to gene set analysis tools such as Enrichr, Rummagene, RummaGEO, Kinase Enrichment Analysis 3 (KEA3), and Chip-X Enrichment Analysis 3 (ChEA3). All gene sets added or created in a session can be saved to a user account for re-analysis and reproducibility or to be shared with others. Overall, GeneSetCart is a useful resource to facilitate hypothesis generation and knowledge integration.

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Details

  • Version
    1.0.1
  • Updated
    October 11, 2024
  • Offered by
    maayanlabapps
  • Size
    153KiB
  • Languages
    English (United States)
  • Developer
    Icahn School of Medicine at Mount Sinai
    1468 Madison Ave Annenberg 19-50 New York, NY 10029 US
    Email
    maayanlabapps@gmail.com
  • Non-trader
    This developer has not identified itself as a trader. For consumers in the European Union, please note that consumer rights do not apply to contracts between you and this developer.

Privacy

The developer has disclosed that it will not collect or use your data.

This developer declares that your data is

  • Not being sold to third parties, outside of the approved use cases
  • Not being used or transferred for purposes that are unrelated to the item's core functionality
  • Not being used or transferred to determine creditworthiness or for lending purposes

Support

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